List of Figures

1. Basic Cross
2. Reformatting Data
3. Simulating Data
4. Chromosome $i$ simulated under mode 0
5. Chromosome $i$ simulated under mode 1
6. Simulated QTL position: Chromosome $i$ near marker $M_{i,j}$
7. Analysis Schematic
8. Visualization Schematic
9. Macintosh Console Schematic
10. Input format for a map.inp file
11. Example of a Model input file
12. Example of a cross.inp file