Change into the mi subdirectory. Run MImapqtl as follows:
% cd mi % MImapqtl -A -V -X mletest -p 1
When finished, note how much time it took for this run (you will need to look at the end of the mletest.log file. Also, look at the file mletestPhase1.mqt and compare the QTLs found to the true model, which is in the file mletest.qtl. How many of the true QTL were found by MImapqtl?