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You need to set the hypothesis test for and crosses.
The default of 1 is fine for crosses in which there are only
two marker genotypic classes (backcrosses and recombinant inbreds). For and ,
values of 30, 31 or 32 are valid. Recall that we have the
For 30, we test . For 31, we test , and .
For 32, we test , and . 30 is probably fine for
Also, if you do only have two genotypic classes, then 10 is the
same as 1 for the hypothesis test.