Traits and Chromosomes

The -t option allows the user to specify which trait in a data set with multiple traits is to be analyzed. For multiple trait analysis, use JZmapqtl. If you set the trait number to one more than the total number of traits, then all traits (except for those whose names begin with a minus sign) will be analyzed in succession: This only works with models 1, 2, 3 and 6.

One can also limit the analysis to a single chromosome with the -c option.