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- AkaikeAkaike1969
-
Akaike, H. (1969).
Fitting autoregressive models for prediction.
Ann. Institute Stat. Math. 21, 243-247.
- Basten, Weir, and ZengBasten
et al.1994
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Basten, C. J., B. S. Weir, and Z.-B. Zeng (1994).
Zmap-a QTL cartographer.
In C. Smith, J. S. Gavora, B. B. J. Chesnais, W. Fairfull, J. P.
Gibson, B. W. Kennedy, and E. B. Burnside (Eds.), Proceedings of the 5th
World Congress on Genetics Applied to Livestock Production: Computing
Strategies and Software, Volume 22, Guelph, Ontario, Canada, pp. 65-66.
Organizing Committee, 5th World Congress on Genetics Applied to Livestock
Production.
- BromanBroman1997
-
Broman, K. W. (1997).
Identifying quantitative trait loci in experimental crosses.
Ph. D. thesis, UC Berkeley, Department of Statistics.
- Carter and FalconerCarter and
Falconer1951
-
Carter, T. C. and D. S. Falconer (1951).
Stocks for detecting linkage in the mouse and the theory of their
design.
J. Genet. 50, 307-323.
- Churchill and DoergeChurchill and
Doerge1994
-
Churchill, G. A. and R. W. Doerge (1994).
Empirical threshold values for quantitative trait mapping.
Genetics 138, 963-971.
- CockerhamCockerham1954
-
Cockerham, C. C. (1954).
An extension of the concept of partitioning hereditary variance for
analysis of covariances among relatives when epistasis is present.
Genetics 39, 859-882.
- Cockerham and ZengCockerham and
Zeng1996
-
Cockerham, C. C. and Z. Zeng (1996).
Design III with marker loci.
Genetics 143, 1437-1456.
- Doerge and ChurchillDoerge and
Churchill1996
-
Doerge, R. W. and G. A. Churchill (1996).
Permutation tests for multiple loci affecting a quantitative
character.
Genetics 142, 285-294.
- Doerge, Zeng, and WeirDoerge
et al.1997
-
Doerge, R. W., Z. Zeng, and B. S. Weir (1997).
Statistical issues in the search for genes affecting quantitative
traits in experimental populations.
Stat. Sci. 12, 195-219.
- Dongarra, Moler, Bunch, and StewartDongarra
et al.1979
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Dongarra, J. J., C. B. Moler, J. R. Bunch, and G. W. Stewart (1979).
LINPACK Users' Guide.
Philadelphia, PA: SIAM.
- Falconer and MacKayFalconer and
MacKay1996
-
Falconer, D. S. and T. F. C. MacKay (1996).
Introduction to Quantitative Genetics.
Essex, UK: Longman Group Limited.
- FelsensteinFelsenstein1979
-
Felsenstein, J. (1979).
A mathematically tractable family of genetic mapping functions with
different amounts of interference.
Genetics 91, 769-775.
- Fisch, Ragot, and GayFisch
et al.1996
-
Fisch, R. D., M. Ragot, and G. Gay (1996).
A generalization of the mixture model in the mapping of quantitative
trait loci for progeny from a bi-parental cross of inbred lines.
Genetics 143, 571-577.
- HaldaneHaldane1919
-
Haldane, J. B. S. (1919).
The combination of linkage values and the calculation of distances
between the loci of linked factors.
J. Genet. 8, 299-309.
- Hannan and QuinnHannan and
Quinn1979
-
Hannan, E. J. and B. G. Quinn (1979).
The determination of the order of an autoregression.
J. Royal Stat. Soc., Series B 41, 190-195.
- Horvat and MedranoHorvat and
Medrano1995
-
Horvat, S. and J. F. Medrano (1995).
Interval mapping of high growth (hg), a major locus that
increases weight gain in mice.
Genetics 139, 1737-1748.
- Jiang and ZengJiang and
Zeng1995
-
Jiang, C. and Z. Zeng (1995).
Multiple trait analysis of genetic mapping for quantitative trait
loci.
Genetics 140, 1111-1127.
- Jiang and ZengJiang and
Zeng1997
-
Jiang, C. and Z. Zeng (1997).
Mapping quantitative trait loci with dominant and missing markers in
various crosses from two inbred lines.
Genetica 101, 47-58.
- Kao and ZengKao and Zeng1997
-
Kao, C. and Z. Zeng (1997).
General formulae for obtaining the MLEs and the asymptotic
variance-covariance matrix in maping quantitative trait loci.
Biometrics 53, 653-665.
- Kao, Zeng, and TeasdaleKao
et al.1999
-
Kao, C., Z. Zeng, and R. Teasdale (1999).
Multiple interval mapping for quantitative trait loci.
Genetics 152, 1203-1216.
- KarlinKarlin1984
-
Karlin, S. (1984).
Theoretical aspects of genetic map functions in recombination
processes.
In A. Chakravarti (Ed.), Human Population Genetics: The
Pittsburgh Symposium, New York, pp. 209-228. Van Nostrand Reinhold.
- KosambiKosambi1944
-
Kosambi, D. D. (1944).
The estimation of map distances from recombination values.
Ann. Eugen. 12, 172-175.
- Lander and BotsteinLander and
Botstein1989
-
Lander, E. S. and D. Botstein (1989).
Mapping mendelian factors underlying quantitative traits using rflp
linkage maps.
Genetics 121, 185-199.
- Lander, Green, Abrahamson, Barlow, Daley,
Lincoln, and NewburgLander et al.1987
-
Lander, E. S., P. Green, J. Abrahamson, A. Barlow, M. Daley, S. Lincoln, and
L. Newburg (1987).
MAPMAKER: An interactive computer package for constructing primary
genetic linkage maps of experimental and natural populations.
Genomics 1, 174-181.
- Lincoln, Daly, and LanderLincoln
et al.1992
-
Lincoln, S., M. Daly, and E. S. Lander (1992).
Constructing genetic maps with MAPMAKER/EXP 3.0.
Technical report, Whitehead Institute Technical Report.
- LiuLiu1998
-
Liu, B. (1998).
Statistical Genomics: Linkage, Mapping and QTL Analysis.
Boca Raton, FL: CRC PRess LLC.
- Lynch and WalshLynch and
Walsh1998
-
Lynch, M. and B. Walsh (1998).
Genetics and Analysis of Quantitative Traits.
Sunderland, MA: Sinauer Associates, Inc.
- Meng and RubinMeng and
Rubin1993
-
Meng, X. and D. B. Rubin (1993).
Maximum likelihood estimation via the ECM algorithm: A general
framework.
Biometrika 80, 267-268.
- MorganMorgan1994
-
Morgan, T. H. (1994).
The Theory of Genes.
New Haven, CN: Yale University Press.
- Press, Flannery, Teukolsky, and
VetterlingPress et al.1988
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Press, W. H., B. P. Flannery, S. A. Teukolsky, and W. T. Vetterling (1988).
Numerical Recipes in C: The Art of Scientific Computing.
Cambridge, UK: Cambridge University Press.
- Rao, Keats, Lalouel, Morton, and LeeRao
et al.1979
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Rao, D. C., B. J. Keats, J. M. Lalouel, N. E. Morton, and S. Lee (1979).
A maximum likelihood map of chromosome 1.
A. J. Hum. Genet. 31, 680-696.
- SchwarzSchwarz1978
-
Schwarz, G. (1978).
Estimating the dimension of a model.
Ann. Stat. 6, 461-464.
- SturtSturt1976
-
Sturt, E. (1976).
A mapping function for human chromosomes.
Ann. Hum. Genet., Lond. 40, 147-147.
- Utz and MelchingerUtz and
Melchinger1996
-
Utz, H. F. and A. Melchinger (1996).
PLABQTL: A program for composite interval mapping of QTL.
J. Agric. Genomics 2, 1.
- Williams and KelleyWilliams and
Kelley1993
-
Williams, T. and C. Kelley (1993).
GNUPLOT: An Interactive Plotting Program.
Version 3.5.
- ZengZeng1992
-
Zeng, Z. (1992).
Correcting the bias of wright's estimates of the number of genes
affecting a quantitative trait: A further improved method.
Genetics 131, 987-1001.
- ZengZeng1993
-
Zeng, Z. (1993).
Theoretical basis for separation of multiple linked gene effects in
mapping quantitative trait loci.
Proc. Natl. Acad. Sci. USA 90, 10972-10976.
- ZengZeng1994
-
Zeng, Z. (1994).
Precision mapping of quantitative trait loci.
Genetics 136, 1457-1468.
- Zeng, Kao, and BastenZeng
et al.1999
-
Zeng, Z., C. Kao, and C. J. Basten (1999).
Estimating the genetic architecture of quantitative traits.
Genetical Research, Camb 74, 279-289.
Christopher Basten
2002-03-27