BUGS

Still under development: We hope to add the joint analysis of multiple traits in multiple environments. We are also working on the output formats.

The A option for refining positions in the work code does not yet behave correctly. It tends to place all putative QTL at the left flanking marker of an interval. If you use this option, then re-run MImapqtl with an R in position four to better refine the position estimate of the QTL.