OPTIONS

See QTLcart(1) for more information on the global options -h for help, -A for automatic, -V for non-Verbose -W path for a working directory, -R file to specify a resource file, -e to specify the log file, -s to specify a seed for the random number generator and -X stem to specify a filename stem. The options below are specific to this program.

If you use this program without specifying any options, then you will get into a menu that allows you to set them interactively.

-o

This requires a filename for output. Qstats will append the file if it exists, and create a new file if it does not. If not used, then Qstats will use qtlcart.qst.

-i

This requires an input filename. This file must exist. It should be in the same format as the output of Rcross. The default file is qtlcart.cro.

-m

Qstats requires a genetic linkage map. This option require the name of a file containing the map. It should be in the same format that Rmap outputs. The default file is qtlcart.map.