DESCRIPTION

Prune allows one to eliminate markers or traits. It removes the data from the file containing the cross and reconstructs the molecular map. It requires a molecular map that could be a random one produced by Rmap, or a real one in the same format as the output of Rmap. The sample could be a randomly generated one from Rcross or a real one in the same format as the output of Rcross.

Prune also does bootstraps, permutations and simulations of missing or dominant markers.