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        % Rcross  -A -V -c SF2 -n 1000

Does a selfed F2 cross with 1000 offspring using the linkage map in and the model in qtlcart.qtl. The command line options -A and -V turn off the interactive menu and the verbosity mode, respectively.

        % Rcross  -i cross.raw 

Reads from the file cross.raw, tries to determine its format, and translates it if possible. The file cross.raw could be a MAPMAKER/QTL formatted file, a cross.inp formatted file or one that is already in the Rcross.out format.

Christopher Basten 2002-03-27