Inhibition Kinetics of the Monolignol Biosynthetic Enzymes

To derive the inhibition constants Kic, Kiu and Kis, we obtained Km and Vmax, the apparent Km and Vmax of the inhibited enzyme at each inhibitor concentration, and plotted Km/Vmax against the inhibitor concentration [I] and 1/Vmax against [I] according to Equations 2 to 4 (below). For evaluating inhibition kinetics, different concentrations of inhibitors were added to the assays. Reaction rates were analyzed by Lineweaver-Burke plots to determine the modes of inhibition. If the addition of inhibitor increases the Km, the mode of inhibition is competitive, meaning that the inhibitor and the substrate both bind to the same active site in a competitive manner. If Vmax decreases as the inhibitor is added, the inhibition is non-competitive, meaning that the inhibitor binds to an alternative regulatory site on the enzyme. If a high concentration of substrates reduces the Vmax, the reaction is said to have substrate self-inhibition, that is, multiple substrate molecules can bind to an enzyme forming an inactive complex. Mixed inhibition is when multiple modes of inhibition (competitive, uncompetitive and substrate) are observed. Click here (Materials and Methods). If you have any questions about these data, would like to use these data for publication, or would like to collaborate, please contact Vincent Chiang Click here (Contacts Page).

Last Updated: April 12, 2015

 

Competitive inhibition equation

 

 

Un-competitive inhibition equation

 

 

Substrate self-inhibition equation

 


FamilyProteinSubstrateProductInhibitorpHTemp
oC
Kic
µM
Kiu
µM
Kis
µM
PALPAL1PheCiACiA8.537 13.44 ± 5.51
PheCiACA8.537 3.33 ± 2.73 13.44 ± 0.94
PAL2PheCiACiA8.537 8.72 ± 3.25833.31 ± 2.82
PheCiACA8.537 5.17 ± 2.02 15.81 ± 1.57
PAL3PheCiACiA8.537 3.45 ± 0.64 49.42 ± 5.41
PheCiACA8.537 5.17 ± 2.02 15.81 ± 1.57
PAL4PheCiACiA8.537 9.02 ± 2.37
PheCiACA8.537 16.19 ± 5.23 15.67 ± 0.79
PAL5PheCiACiA8.537 5.50 ± 3.76
PheCiACA8.537 13.27 ± 1.90 42.45 ± 1.29
4CL4CL34A4ACoACA840 9.22 ± 2.68
4A4ACoAFA840 55.05 ± 13.20
4A4ACoA5HFA840 39.31 ± 3.95
4A4ACoASA840 78.11 ± 15.20
4A4ACoA4CoSA840 14.55 ± 0.57 53.88 ± 3.29
4A4ACoACaSA840190.87 ± 4.20532.10 ± 19.60
CACaCoA4A840 43.73 ± 1.09
CACaCoAFA840 59.36 ± 12.50
CACaCoA5HFA840198.18 ± 10.03
CACaCoA4CoSA840 8.47 ± 3.18 27.81 ± 2.98
FAFCoA4A840 13.12 ± 2.82
FAFCoACA840 3.15 ± 0.26
FAFCoA5HFA840 7.63 ± 1.75
FAFCoASA840163.72 ± 14.40
4CL54A4ACoACA741 7.06 ± 3.10 49.75 ± 7.80
4A4ACoAFA741335.54 ± 76.10178.21 ± 60.70
4A4ACoA5HFA741 48.80 ± 14.50 37.48 ± 5.94
4A4ACoASA741631.72 ± 189.00238.41 ± 44.70
4A4ACoA4CoSA741 44.31 ± 4.29146.96 ± 2.33
4A4ACoACaSA741 65.55 ± 0.90646.80 ± 7.40
CACaCoA4A741122.70 ± 6.70 78.07 ± 10.83
CACaCoACA741 55.97 ± 6.05
CACaCoAFA741518.93 ± 28.80372.06 ± 73.26
CACaCoA5HFA741 45.36 ± 1.75306.81 ± 40.59
CACaCoASA7412841.64 ± 101.25157.21 ± 9.35
CACaCoA4CoSA741 18.44 ± 8.76 70.11 ± 9.87
FAFCoA4A741 27.92 ± 3.70
FAFCoACA741 18.47 ± 0.50 14.98 ± 0.67
FAFCoA5HFA741185.78 ± 56.60 18.71 ± 4.62
FAFCoASA741384.85 ± 30.70450.83 ± 4.10
CAld5HCAld5H1FA5HFACnAld5.737 0.40 ± 0.03 1.50 ± 0.20
CnAlc5HCnAlcCnAld5.737 0.84 ± 0.03 1.70 ± 0.30
CAld5H2FA5HFACnAld5.125 0.37 ± 0.07 1.00 ± 0.04
CnAlc5HCnAlcCnAld5.125 18.80 ± 3.80
AldOMTAldOMT2CAFA5HFA7.530 38.62 ± 4.94245.04 ± 31.38
CAFACAld7.530 2.08 ± 0.46 7.57 ± 1.66
CAFA5HCnAld7.530 0.20 ± 0.03 2.70 ± 0.41
CAFACAlc7.530 1.63 ± 0.56 12.10 ± 4.20
CAFA5HCnAlc7.530 3.80 ± 0.44 23.23 ± 2.66
CAldCnAldCA7.530174.68 ± 21.49
CAldCnAld5HFA7.530 19.79 ± 2.10
CAldCnAldCAld7.530 14.80 ± 0.92
CAldCnAld5HCnAld7.530 0.55 ± 0.17 1.45 ± 0.31
CAldCnAld5HCnAlc7.530 0.80 ± 0.12
5HCnAldSAldCAld7.530 0.29 ± 0.04
5HCnAldSAld5HCnAld7.530 1.81 ± 0.14
5HCnAldSAldCAlc7.530 2.50 ± 0.60 14.37 ± 1.86
5HCnAldSAld5HCnAlc7.530 1.55 ± 0.46
CAlcCnAlcCAld7.530 5.65 ± 0.92 0.73 ± 0.06
CAlcCnAlc5HCnAld7.530 0.13 ± 0.01 0.54 ± 0.05
CAlcCnAlcCAlc7.530 26.60 ± 1.43
CAlcCnAlc5HCnAlc7.530 3.14 ± 0.68
5HCnAlcSAlc5HCnAlc7.530 2.28 ± 0.21
CADCAD1CnAldCnAlcSAld6.124 0.32 ± 0.19 3.02 ± 1.12
SAldSAlcCnAld6.124 0.42 ± 0.39 1.92 ± 0.09