• What is a Cluster
• Cluster Schematic
• Cluster Purpose
• Hardware
• Data Protection
• Sensitive Data
• Cluster Software
• Documentation

• Getting Help

• Connecting
• Accessing the internet

• Update 2021 Overview
• Enforcing Core Counts
• Enforcing Memory Allocation
• Using Old and New Clusters

Example scripts mentioned throughout the following pages can be found on the cluster in /home/cluster_workshop. (Look for the “Files:” notes embedded in the text.)

When you have logged in to the cluster, Which software is in your path is controlled by “Environment Modules”.

• Environment Modules

The job management software is SLURM. SLURM basics are described on the next few links.

• Partitions
• Cluster Resources
• Job and Cluster Status
• Running Jobs
  • Submitting many jobs
• Scheduling
• Stopping Jobs

• Etiquette

• Mail Notifications

• Using Singularity

• Cheat Sheet

• Leaving

• Archived Accounts

• Memory Use Monitoring
• GPU Computing
• GPU Monitor

• Running X Applications
• Installing Programs
• Running JupyterLab
• R and BLAS Libraries

• Copying Data to the Nodes

• Job Dependencies

• MySQL

• Node Performance
• Cluster Utilization

• Blast Notes

• Linux Command Line Basics

• Web Server
• Virtual Machines

• Administration Notes